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Biomolecular and Proteomics Mass Spectrometry Facility BPMSF
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  4. Protein Sequencing: Data Analysis

Protein Sequencing: Data Analysis

This facility offers a number of tools for automated and manual searches of tandem mass spectrometry results.

 

PEAKS

PEAKS is a proteomics software program for tandem mass spectrometry designed for peptide sequencing, protein identification and quantification.

ProteinPilot

Is a commercially available software for automated database searches of tandem mass spectrometry data.

MASCOT

MASCOT is another commercially available software for automated database searches of tandem mass spectrometry data.

InsPecT

An online search engine for analysis of tandem mass spectrometry data. This tool has been developed by Center for computational mass spectroscopy at UCSD. In addition to InsPect this center has developed number of other mass spectrometry analysis tools such as PepNovo for automated de novo sequencing of mass spectrometry data in the absence of sequence database.